Stem-loop nta-MIR171b

Accession

MI0021377

Description

Nicotiana tabacum nta-MIR171b precursor miRNA

Literature search

5 open access papers mention nta-MIR171b
(8 sentences)

Sequence

17215 reads, 800.0 reads per million, 41 experiments

uaaaggaagCGAUGUUGGUGAGGUUCAAUCcgaagacguguuuacguuuuguuuucguaaaaaacgaucucagaUUGAGCCGCGCCAAUAUCACUuccuauauau
...((((((.((((((((((.(((((((((.((.(((((.((((((.........))))))..))).)))).))))))))).)))))))))).))))))......

Structure

---uaa      C          A         c  a  -   -g      uuu 
      aggaag GAUGUUGGUG GGUUCAAUC ga ga cgu  uuuacg   u
      |||||| |||||||||| ||||||||| || || |||  ||||||   g
      uccuUC CUAUAACCGC CCGAGUUag cu cu gca  aaaugc   u
uauaua      A          G         a  -  a   aa      uuu 

Annotation confidence High

Genome context

Unknown

Mature nta-miR171b-5p

• Accession: MIMAT0058084
• Description: Nicotiana tabacum nta-miR171b-5p mature miRNA
• Sequence: 10 - CGAUGUUGGUGAGGUUCAAUC - 30
• Evidence: experimental ; unknown

Mature nta-miR171b-3p

• Accession: MIMAT0024687
• Description: Nicotiana tabacum nta-miR171b-3p mature miRNA
• Sequence: 75 - UUGAGCCGCGCCAAUAUCACU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28