Stem-loop nta-MIR171c

Accession

MI0021378

Description

Nicotiana tabacum nta-MIR171c precursor miRNA

Literature search

5 open access papers mention nta-MIR171c
(7 sentences)

Sequence

107551 reads, 7674.0 reads per million, 44 experiments

acaguaacucaggUAUUGGCCUGGUUCACUCAGAcaacaagaugaaacuauuugaauauugaaugguggaguuuugguuUGAUUGAGCCGUGCCAAUAUCucaguuucuc
..((.((((.((((((((((.(((((((.((((((..((((((...(((((((((...)))))))))...)))))))))))).))))))).)))))))))).)))).)).

Structure

ac  u    c          C       C      aa      gaa         a 
  ag aacu aggUAUUGGC UGGUUCA UCAGAc  caagau   acuauuuga  
  || |||| |||||||||| ||||||| ||||||  ||||||   ||||||||| u
  uc uuga uCUAUAACCG GCCGAGU AGUuug  guuuug   ugguaaguu  
-c  u    c          U       U      --      agg         a 

Annotation confidence High

Genome context

Unknown

Mature nta-miR171c-5p

• Accession: MIMAT0058085
• Description: Nicotiana tabacum nta-miR171c-5p mature miRNA
• Sequence: 14 - UAUUGGCCUGGUUCACUCAGA - 34
• Evidence: experimental ; unknown

Mature nta-miR171c-3p

• Accession: MIMAT0024688
• Description: Nicotiana tabacum nta-miR171c-3p mature miRNA
• Sequence: 80 - UGAUUGAGCCGUGCCAAUAUC - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28