Stem-loop nta-MIR172a

Accession

MI0021379

Description

Nicotiana tabacum nta-MIR172a precursor miRNA

Literature search

7 open access papers mention nta-MIR172a
(24 sentences)

Sequence

37157 reads, 6762.0 reads per million, 36 experiments

uuuugcagauGCAGCAUCUUCAAGAUUCACAUauaguauauuuuauggaguucaauugugggagaaaaaaauuaaauuuucuugcucccuauggcuccuuaauuuaauaugAGAAUCUUGAUGAUGCUGCAGcagcaaugaa
..((((...(((((((((.(((((((((.(((((....((..(((.(((((.((.....(((((((.(((((...))))).)).)))))..))))))).)))..))))))).))))))))).)))))))))...))))....

Structure

--uu    aga         U         A     agua  uu   u     u  auugu     -  a     u 
    uugc   uGCAGCAUC UCAAGAUUC CAUau    ua  uua ggagu ca     gggag aa aaaau  
    ||||   ||||||||| ||||||||| |||||    ||  ||| ||||| ||     ||||| || ||||| a
    aacg   ACGUCGUAG AGUUCUAAG guaua    au  aau ccucg gu     cccuc uu uuuua  
aagu    acG         U         A     ----  uu   u     -  ---au     g  c     a 

Annotation confidence High

Genome context

Unknown

Mature nta-miR172a-5p

• Accession: MIMAT0058086
• Description: Nicotiana tabacum nta-miR172a-5p mature miRNA
• Sequence: 11 - GCAGCAUCUUCAAGAUUCACAU - 32
• Evidence: experimental ; unknown

Mature nta-miR172a-3p

• Accession: MIMAT0024689
• Description: Nicotiana tabacum nta-miR172a-3p mature miRNA
• Sequence: 112 - AGAAUCUUGAUGAUGCUGCAG - 132
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28