Stem-loop nta-MIR172b

Accession

MI0021380

Description

Nicotiana tabacum nta-MIR172b precursor miRNA

Literature search

7 open access papers mention nta-MIR172b
(24 sentences)

Sequence

805 reads, 111.0 reads per million, 23 experiments

acuugcagcuGCAGCAUUAUCAAGAUUCACauagaaaucauguggagcagaaaauauguuucuaaaaaucugccaccccuaaguuuuuuuugaauaugAGAAUCAUGAUGAUGCUGCAUcagcaaauaa
..((((.(.(((((((((((((.(((((.(((((((((...(.((.(((((.................)))))...)))...))))).......)))).))))).))))))))))))).).))))....

Structure

--ac    a c             A     A    -------     cau u  --a     aaauaug 
    uugc g uGCAGCAUUAUCA GAUUC Caua       gaaau   g gg   gcaga       u
    |||| | ||||||||||||| ||||| ||||       |||||   | ||   |||||       u
    aacg c ACGUCGUAGUAGU CUAAG guau       uuuug   c cc   cgucu       u
aaua    a U             A     A    aaguuuu     aau -  cac     aaaaauc 

Annotation confidence High

Genome context

Unknown

Mature nta-miR172b-5p

• Accession: MIMAT0058087
• Description: Nicotiana tabacum nta-miR172b-5p mature miRNA
• Sequence: 11 - GCAGCAUUAUCAAGAUUCAC - 30
• Evidence: experimental ; unknown

Mature nta-miR172b-3p

• Accession: MIMAT0024690
• Description: Nicotiana tabacum nta-miR172b-3p mature miRNA
• Sequence: 99 - AGAAUCAUGAUGAUGCUGCAU - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28