Stem-loop nta-MIR172c

Accession

MI0021381

Description

Nicotiana tabacum nta-MIR172c precursor miRNA

Literature search

6 open access papers mention nta-MIR172c
(22 sentences)

Sequence

52352 reads, 4053.0 reads per million, 41 experiments

guuugcggauGUAGCAUCAUCAAGAUUCACAUGcaaaacgcauggugaugaaaugauauuaauggccauggcagcuuuuugaaggugAGAAUCUUGAUGAUGCUGCAUcagcaauaa
..((((.(((((((((((((((((((((.(((.(((((.(((((((.((............)).)))))....)).)))))...))).))))))))))))))))))))).))))...

Structure

-gu    g                     A   --G     c  ----     g  gaaau 
   uugc gauGUAGCAUCAUCAAGAUUC CAU   caaaa gc    auggu au     g
   |||| ||||||||||||||||||||| |||   ||||| ||    ||||| ||      
   aacg cUACGUCGUAGUAGUUCUAAG gug   guuuu cg    uaccg ua     a
aau    a                     A   gaa     u  acgg     g  auuau 

Annotation confidence High

Genome context

Unknown

Mature nta-miR172c-5p

• Accession: MIMAT0058088
• Description: Nicotiana tabacum nta-miR172c-5p mature miRNA
• Sequence: 11 - GUAGCAUCAUCAAGAUUCACAUG - 33
• Evidence: experimental ; unknown

Mature nta-miR172c-3p

• Accession: MIMAT0024691
• Description: Nicotiana tabacum nta-miR172c-3p mature miRNA
• Sequence: 88 - AGAAUCUUGAUGAUGCUGCAU - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28