Stem-loop nta-MIR172d

Accession

MI0021382

Description

Nicotiana tabacum nta-MIR172d precursor miRNA

Literature search

6 open access papers mention nta-MIR172d
(22 sentences)

Sequence

52280 reads, 4240.0 reads per million, 39 experiments

guuugcagauGUAGCAUCAUCAAGAUUCACAUaaaaaacgcauggugaugagcugaugaaaugacauuaauggccaaggcagcuuucugaaggugAGAAUCUUGAUGAUGCUGCAUcagcaauaaa
..((((.(((((((((((((((((((((.(((.......((.((((.((....(((((......))))))).))))..))..(((....)))))).))))))))))))))))))))).))))....

Structure

--gu    a                     A   -----aaaaaac  -a    g  gagc     aa 
    uugc gauGUAGCAUCAUCAAGAUUC CAU            gc  uggu au    ugaug  a
    |||| ||||||||||||||||||||| |||            ||  |||| ||    |||||   
    aacg cUACGUCGUAGUAGUUCUAAG gug            cg  accg ua    auuac  u
aaau    a                     A   gaagucuuucga  ga    g  ----     ag 

Annotation confidence High

Genome context

Unknown

Mature nta-miR172d-5p

• Accession: MIMAT0058089
• Description: Nicotiana tabacum nta-miR172d-5p mature miRNA
• Sequence: 11 - GUAGCAUCAUCAAGAUUCACAU - 32
• Evidence: experimental ; unknown

Mature nta-miR172d-3p

• Accession: MIMAT0024692
• Description: Nicotiana tabacum nta-miR172d-3p mature miRNA
• Sequence: 96 - AGAAUCUUGAUGAUGCUGCAU - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28