Stem-loop nta-MIR172e

Accession

MI0021383

Description

Nicotiana tabacum nta-MIR172e precursor miRNA

Literature search

6 open access papers mention nta-MIR172e
(23 sentences)

Sequence

53125 reads, 4127.0 reads per million, 41 experiments

guuugcagauguagcaucaucaagauucacauaaaaaacgcauggugaugagcugaugaaaugacauuaauggccaaggcagcuuucugaaggugAGAAUCUUGAUGAUGCUGCAucagcaauaaacgacuaccugauuuaucauuaugccauuggaacgauacacagauaauuagcauaauucaugugcaagaaugccacggguacaugguaugguucaauugauacagucguuguuugcggguguagcaucaucaagauucacaugaaaaggcaaggugaaaugaaauuaauuaagagccauggcuuuuugaaggugAGAAUCUUGAUGAUGCUGCAUcagcaauaa
..((((.(((((((((((((((((((((...........((.((((.((....(((((......))))))).))))..)).((((((.....(((.(((((((((((((((((((((.((((..(((((((............(((((((.((((..............))))..))))))).(((((((..(.......)..)))))))((((.(......).)))))))))))..)))).))))))))))))))))))))).)))((((((.((.(((....(((......)))...))).)).))))))))))))..))))))))))))))))))))).))))...

Structure

-gu    a                     acauaaaaaacgcauggugaugagcugaugaaaugacauuaauggccaaggca      ----------------------------------------ugaag   A                     a    ua       accugauuuaucauuaugccauuggaacgauacacagauaauuagca 
   uugc gauguagcaucaucaagauuc                                                     gcuuuc                                             gug GAAUCUUGAUGAUGCUGCAuc gcaa  aacgacu                                               u
   |||| |||||||||||||||||||||                                                     ||||||                                             ||| ||||||||||||||||||||| ||||  |||||||                                               a
   aacg cUACGUCGUAGUAGUUCUAAG                                                     uggaag                                             uac cuuagaacuacuacgaugugg cguu  uugcuga                                               a
aau    a                     ---------------------------------------------------Ag      uuuuucgguaccgagaauuaauuaaaguaaaguggaacggaaaag   a                     g    ug       cauaguuaacuugguaugguacaugggcaccguaagaacguguacuu 

Annotation confidence Low

Genome context

Unknown

Mature nta-miR172e-5p

• Accession: MIMAT0058090
• Description: Nicotiana tabacum nta-miR172e-5p mature miRNA
• Sequence: 96 - AGAAUCUUGAUGAUGCUGCA - 115
• Evidence: experimental ; unknown

Mature nta-miR172e-3p

• Accession: MIMAT0024693
• Description: Nicotiana tabacum nta-miR172e-3p mature miRNA
• Sequence: 320 - AGAAUCUUGAUGAUGCUGCAU - 340
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28