Stem-loop nta-MIR172f

Accession

MI0021384

Description

Nicotiana tabacum nta-MIR172f precursor miRNA

Literature search

6 open access papers mention nta-MIR172f
(28 sentences)

Sequence

52456 reads, 4173.0 reads per million, 40 experiments

ucugaaggugAGAAUCUUGAUGAUGCUGCAUcagcaauaaacgacuaccugauuuaucauuaugccauuggaacgauacacagauaauuagcauaauucaugugcaagaaugccacggguacaugguaugguucaauugauacagucguuguuugcggguGUAGCAUCAUCAAGAUUCACAUGaaaaggc
.((....(((.(((((((((((((((((((((.((((..(((((((............(((((((.((((..............))))..))))))).(((((((..(.......)..)))))))((((.(......).)))))))))))..)))).))))))))))))))))))))).)))....))..

Structure

-u  gaag   A                     a    ua       ----------------------------------accugauuuauc       -c    gaacga 
  cu    gug GAAUCUUGAUGAUGCUGCAUc gcaa  aacgacu                                              auuaugc  auug      u
  ||    ||| ||||||||||||||||||||| ||||  |||||||                                              |||||||  ||||       
  ga    UAC CUUAGAACUACUACGAUGugg cguu  uugcuga                                              uaauacg  uaau      a
cg  aaaG   A                     g    ug       cauaguuaacuugguaugguacaugggcaccguaagaacguguacu       au    agacac 

Annotation confidence High

Genome context

Unknown

Mature nta-miR172f-5p

• Accession: MIMAT0024694
• Description: Nicotiana tabacum nta-miR172f-5p mature miRNA
• Sequence: 11 - AGAAUCUUGAUGAUGCUGCAU - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR172f-3p

• Accession: MIMAT0058091
• Description: Nicotiana tabacum nta-miR172f-3p mature miRNA
• Sequence: 161 - GUAGCAUCAUCAAGAUUCACAUG - 183
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28