Stem-loop nta-MIR172g

Accession

MI0021385

Description

Nicotiana tabacum nta-MIR172g precursor miRNA

Literature search

6 open access papers mention nta-MIR172g
(27 sentences)

Sequence

50652 reads, 4616.0 reads per million, 35 experiments

acuugcagcuGCAGCAUUAUCAAGAUUCACauagaaaucauguggggcagaaaacauagguucuaaaaaucuaaccccaaguucuuugaacaugAGAAUCUUGAUGAUGCUGCAUcagcaaaua
..((((.(.(((((((((((((((((((.(((..........(((((.........((((((.....)))))).))))).((((...))))))).))))))))))))))))))).).))))...

Structure

-ac    a c                   A   --agaaaucaug     cagaaaaca      c 
   uugc g uGCAGCAUUAUCAAGAUUC Cau            ugggg         uagguu u
   |||| | ||||||||||||||||||| |||            |||||         |||||| a
   aacg c ACGUCGUAGUAGUUCUAAG gua            acccc         aucuaa a
aua    a U                   A   caaguuucuuga     --------a      a 

Annotation confidence High

Genome context

Unknown

Mature nta-miR172g-5p

• Accession: MIMAT0058092
• Description: Nicotiana tabacum nta-miR172g-5p mature miRNA
• Sequence: 11 - GCAGCAUUAUCAAGAUUCAC - 30
• Evidence: experimental ; unknown

Mature nta-miR172g-3p

• Accession: MIMAT0024695
• Description: Nicotiana tabacum nta-miR172g-3p mature miRNA
• Sequence: 95 - AGAAUCUUGAUGAUGCUGCAU - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28