Stem-loop nta-MIR172h

Accession

MI0021386

Description

Nicotiana tabacum nta-MIR172h precursor miRNA

Literature search

6 open access papers mention nta-MIR172h
(22 sentences)

Sequence

52333 reads, 4057.0 reads per million, 41 experiments

guuugcggguGUAGCAUCAUCAAGAUUCACAUGaaaaggcaaggugaaaugaaauuaauuaagagccauggcuuuuugaaggugAGAAUCUUGAUGAUGCUGCAUcagcaauaa
..((((.(((((((((((((((((((((.(((((((((.((.(((....(((......)))...))).)).))))))....))).))))))))))))))))))))).))))...

Structure

-gu    g                     A   ----      g  a   gaaa   aa 
   uugc gguGUAGCAUCAUCAAGAUUC CAU    Gaaaag ca ggu    uga  u
   |||| ||||||||||||||||||||| |||    |||||| || |||    |||   
   aacg cUACGUCGUAGUAGUUCUAAG gug    uuuuuc gu ccg    auu  u
aau    a                     A   gaag      g  a   -aga   aa 

Annotation confidence High

Genome context

Unknown

Mature nta-miR172h-5p

• Accession: MIMAT0058093
• Description: Nicotiana tabacum nta-miR172h-5p mature miRNA
• Sequence: 11 - GUAGCAUCAUCAAGAUUCACAUG - 33
• Evidence: experimental ; unknown

Mature nta-miR172h-3p

• Accession: MIMAT0024696
• Description: Nicotiana tabacum nta-miR172h-3p mature miRNA
• Sequence: 85 - AGAAUCUUGAUGAUGCUGCAU - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28