Stem-loop nta-MIR172i

Accession

MI0021387

Description

Nicotiana tabacum nta-MIR172i precursor miRNA

Literature search

7 open access papers mention nta-MIR172i
(23 sentences)

Sequence

79292 reads, 5644.0 reads per million, 39 experiments

guuugcagauGUAGCAUCAUCAAGAUUCACAUauuauaaaggcaugaugauuaacgaccauggccuuuuuggaggugAGAAUCUUGAUGAUGCUGCAUuagcaauaaac
..((((.(((((((((((((((((((((.(((.(((.(((((((((............))).)))))).)))..))).))))))))))))))))))))).)))).....

Structure

---gu    a                     A   -a   u      -   augau 
     uugc gauGUAGCAUCAUCAAGAUUC CAU  uua aaaggc aug     u
     |||| ||||||||||||||||||||| |||  ||| |||||| |||      
     aacg uUACGUCGUAGUAGUUCUAAG gug  ggu uuuccg uac     a
caaau    a                     A   ga   u      g   cagca 

Annotation confidence High

Genome context

Unknown

Mature nta-miR172i-5p

• Accession: MIMAT0058094
• Description: Nicotiana tabacum nta-miR172i-5p mature miRNA
• Sequence: 11 - GUAGCAUCAUCAAGAUUCACAU - 32
• Evidence: experimental ; unknown

Mature nta-miR172i-3p

• Accession: MIMAT0024697
• Description: Nicotiana tabacum nta-miR172i-3p mature miRNA
• Sequence: 78 - AGAAUCUUGAUGAUGCUGCAU - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28