Stem-loop nta-MIR172j

Accession

MI0021388

Description

Nicotiana tabacum nta-MIR172j precursor miRNA

Literature search

6 open access papers mention nta-MIR172j
(22 sentences)

Sequence

16024 reads, 1436.0 reads per million, 33 experiments

guuUGAGGAUGCAUCAUCAUCAAGauucacaaacuugaaaggagaaaggaucuacauacggguuaggucgaacccaguauauuugcucaaaauaguguauuuaucuuaagaaauuuauuaaauauguacauauauuaaauuuugaaaucauuuauuacauuugaggucguuguucuaaaauccaagauucuccuaaauuucauaugGGAAUCUUGAUGAUGCUGCAUcaucaaacau
((((((.((((((.((((((((((((((.((....(((((((((((.((((......(((((((......)))))((((....))))...((((((((((.(((.((((........))))))).)))))).)))).......((..(((...........)))..))...))......))))....)))))))....))))..)).)))))))))))))).)))))).))))))..

Structure

--      G      U              a  aacu    ----       ---a    cuacau  ----ggguuaggucgaacccaguauauuugcucaa    -      u   c    gaa 
  guuUGA GAUGCA CAUCAUCAAGauuc ca    ugaa    aggagaa    ggau      ac                                   aaua guguau uau uuaa   a
  |||||| |||||| |||||||||||||| ||    ||||    |||||||    ||||      ||                                   |||| |||||| ||| ||||    
  caaacu cUACGU GUAGUAGUUCUAAG gu    acuu    uccucuu    ccua      ug                                   uuau uacaug aua aauu   u
ua      a      C              G  --au    uaaa       agaa    aaaucu  uugcuggaguuuacauuauuuacuaaaguuuuaaa    a      u   -    auu 

Annotation confidence Medium

Genome context

Unknown

Mature nta-miR172j-5p

• Accession: MIMAT0058095
• Description: Nicotiana tabacum nta-miR172j-5p mature miRNA
• Sequence: 4 - UGAGGAUGCAUCAUCAUCAAG - 24
• Evidence: experimental ; unknown

Mature nta-miR172j-3p

• Accession: MIMAT0024698
• Description: Nicotiana tabacum nta-miR172j-3p mature miRNA
• Sequence: 207 - GGAAUCUUGAUGAUGCUGCAU - 227
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28