Stem-loop nta-MIR319a

Accession

MI0021389

Description

Nicotiana tabacum nta-MIR319a precursor miRNA

Literature search

6 open access papers mention nta-MIR319a
(8 sentences)

Sequence

40328 reads, 9510.0 reads per million, 46 experiments

aguuaugaagagagcuuucuucgguccacacauaggaggugauaagguucaauUUGCUGCCGACUCAUUCAUCCAaaugcugagguuagauagucgaaagcaccucaguagcugaaugaaugaagcgggaguacaaguugagucuuaaguuuccugugcUUGGACUGAAGGGAGCUCCCUcuuacaauc
.....(((((((((((((((((((((((..((((((((((..((((((((((((((((.(((..((((((((.((..(((((((((...............)))))))))..)).))))))))..))).))..)))))))))))))).))))))))))..)))))))))))))))))..)))).))...

Structure

aguua  -    --                 ca          ga              --  G   AC        C  aa         uagaua 
     ug aaga  gagcuuucuucggucca  cauaggaggu  uaagguucaauUUG  CU CCG  UCAUUCAU CA  ugcugaggu      g
     || ||||  |||||||||||||||||  ||||||||||  ||||||||||||||  || |||  |||||||| ||  |||||||||      u
     ac uucU  CUCGAGGGAAGUCAGGU  guguccuuug  auucugaguugaac  ga ggc  aguaagua gu  augacucca      c
--cua  a    CC                 Uc          -a              au  g   ga        a  cg         cgaaag 

Annotation confidence Low

Genome context

Unknown

Mature nta-miR319a-5p

• Accession: MIMAT0058096
• Description: Nicotiana tabacum nta-miR319a-5p mature miRNA
• Sequence: 54 - UUGCUGCCGACUCAUUCAUCCA - 75
• Evidence: experimental ; unknown

Mature nta-miR319a-3p

• Accession: MIMAT0024699
• Description: Nicotiana tabacum nta-miR319a-3p mature miRNA
• Sequence: 160 - UUGGACUGAAGGGAGCUCCCU - 180
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28