Stem-loop nta-MIR319b

Accession

MI0021390

Description

Nicotiana tabacum nta-MIR319b precursor miRNA

Literature search

6 open access papers mention nta-MIR319b
(8 sentences)

Sequence

48450 reads, 11618.0 reads per million, 46 experiments

cgguuuaagagagcuuccuucaguccacucauagguggaugaaggggauuuggauAGCUGCCGACUCAUUCAUUCAaacacaguagaaaaucauauauguauuucuauacgcuacugugaaugugugaaugaugcgggagguaaauucaucccuuuuuaucugugcUUGGACUGAAGGGAGCUCCCUuuugccuuu
.(((..(((.(((((((((((((((((..((((((((...((((((((..((((((.((.(((..((((((((.((..((((((((...........(((((....)))))))))))))..)).))))))))..))).)).))..))))))))))))))))))))..))))))))))))))))).)))..)))...

Structure

--c   uu   a                 cu        gau        uu    --  G  G   AC        U  aa        aaaaucauaua     u 
   ggu  aag gagcuuccuucagucca  cauaggug   gaagggga  ugga  uA CU CCG  UCAUUCAU CA  cacaguag           uguau u
   |||  ||| |||||||||||||||||  ||||||||   ||||||||  ||||  || || |||  |||||||| ||  ||||||||           |||||  
   ccg  uUC CUCGAGGGAAGUCAGGU  gugucuau   uuuucccu  acuu  au ga ggc  aguaagug gu  gugucauc           gcaua c
uuu   uu   C                 Uc        ---        --    aa  g  g   gu        u  aa        -----------     u 

Annotation confidence Low

Genome context

Unknown

Mature nta-miR319b-5p

• Accession: MIMAT0058097
• Description: Nicotiana tabacum nta-miR319b-5p mature miRNA
• Sequence: 56 - AGCUGCCGACUCAUUCAUUCA - 76
• Evidence: experimental ; unknown

Mature nta-miR319b-3p

• Accession: MIMAT0024700
• Description: Nicotiana tabacum nta-miR319b-3p mature miRNA
• Sequence: 167 - UUGGACUGAAGGGAGCUCCCU - 187
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28