Stem-loop nta-MIR390a

Accession

MI0021391

Description

Nicotiana tabacum nta-MIR390a precursor miRNA

Literature search

3 open access papers mention nta-MIR390a
(5 sentences)

Sequence

47754 reads, 2627.0 reads per million, 46 experiments

gaaaucuguaAAGCUCAGGAGGGAUAGCACCauggagagacuauacuaucuucaugagcuuaaaacugcgauccguugCGCUAUCCAUCCUGAGUUUCauggcuucuu
(((..((((.((((((((((.(((((((..((((((((..........))))))))...........((((....))))))))))).)))))))))).)))).)))..

Structure

--   au    a          G       ---------------------AC        gacu 
  gaa  cugu AAGCUCAGGA GGAUAGC                       Cauggaga    a
  |||  |||| |||||||||| |||||||                       ||||||||     
  cuu  ggua UUUGAGUCCU CCUAUCG                       guacuucu    u
uu   -c    C          A       Cguugccuagcgucaaaauucga        auca 

Annotation confidence High

Genome context

Unknown

Mature nta-miR390a-5p

• Accession: MIMAT0024701
• Description: Nicotiana tabacum nta-miR390a-5p mature miRNA
• Sequence: 11 - AAGCUCAGGAGGGAUAGCACC - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR390a-3p

• Accession: MIMAT0058098
• Description: Nicotiana tabacum nta-miR390a-3p mature miRNA
• Sequence: 79 - CGCUAUCCAUCCUGAGUUUC - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28