Stem-loop nta-MIR390c

Accession

MI0021393

Description

Nicotiana tabacum nta-MIR390c precursor miRNA

Literature search

2 open access papers mention nta-MIR390c
(3 sentences)

Sequence

33417 reads, 2467.0 reads per million, 46 experiments

gagaaucuguaAAGCUCAGGAGGGAUAGCGCCauggaugaauauuaguaacacuauugcuuguuuuagccaucuguagCGCUAUCCAUCCUGAGUUUCauagcuucuu
(((((.((((.((((((((((.(((((((((.(((((((..((..(((((.....))))).....))..))))))).))))))))).)))))))))).)))).)))))

Structure

     u    a          G         C       aa  ---uu     c 
gagaa cugu AAGCUCAGGA GGAUAGCGC auggaug  ua     aguaa a
||||| |||| |||||||||| ||||||||| |||||||  ||     ||||| c
uucuu gaua UUUGAGUCCU CCUAUCGCg ugucuac  au     ucguu u
     c    C          A         a       cg  uuugu     a 

Annotation confidence High

Genome context

Unknown

Mature nta-miR390c-5p

• Accession: MIMAT0024703
• Description: Nicotiana tabacum nta-miR390c-5p mature miRNA
• Sequence: 12 - AAGCUCAGGAGGGAUAGCGCC - 32
• Evidence: experimental ; Illumina [1]

Mature nta-miR390c-3p

• Accession: MIMAT0058100
• Description: Nicotiana tabacum nta-miR390c-3p mature miRNA
• Sequence: 79 - CGCUAUCCAUCCUGAGUUUC - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28