Stem-loop nta-MIR396a

Accession

MI0021398

Description

Nicotiana tabacum nta-MIR396a precursor miRNA

Literature search

4 open access papers mention nta-MIR396a
(19 sentences)

Sequence

418485 reads, 45984.0 reads per million, 46 experiments

cuuuguauuuUUCCACAGCUUUCUUGAACUGcauauauuugaaaacucacaccauauauaaccaauuauuauuauuggaggugaaaauaaaauaaaaaauuguugcgGUUCAAUAAGGCUGUGGGAAGauacagauagu
.(((((((((((((((((((((.((((((((((..(((((......((((.(((...((((.......))))...)))..)))).....))))).........)))))))))).)))))))))))))))))))))....

Structure

---c                     C          -------ua     gaaaac    -a   uau    cc 
    uuuguauuuUUCCACAGCUUU UUGAACUGca         uauuu      ucac  cca   auaa  a
    ||||||||||||||||||||| ||||||||||         |||||      ||||  |||   ||||  a
    agacauaGAAGGGUGUCGGAA AACUUGgcgu         auaaa      agug  ggu   uauu  u
ugau                     U          uguuaaaaa     -auaaa    ga   uau    au 

Annotation confidence High

Genome context

Unknown

Mature nta-miR396a-5p

• Accession: MIMAT0024708
• Description: Nicotiana tabacum nta-miR396a-5p mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUG - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR396a-3p

• Accession: MIMAT0058104
• Description: Nicotiana tabacum nta-miR396a-3p mature miRNA
• Sequence: 108 - GUUCAAUAAGGCUGUGGGAAG - 128
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28