Stem-loop nta-MIR396b

Accession

MI0021399

Description

Nicotiana tabacum nta-MIR396b precursor miRNA

Literature search

5 open access papers mention nta-MIR396b
(19 sentences)

Sequence

378085 reads, 25880.0 reads per million, 45 experiments

agucaugcuuUUCCACAGCUUUCUUGAACUUcuucuagcugaauuuugaucucucuuuaggcaauuguggauaguuuuaauuugagagaugagauuuaaagcucugaaagUCCAAGAAAGCUGUGGGAAAauauggcaau
.((((((.((((((((((((((((((.((((..((.(((((((((((.(((((((.......(((((....))))).......))))))))))))))..))))..)))))).)))))))))))))))))).))))))...

Structure

--a      c                  A    cu  -u    --       g       uuuaggc     u 
   gucaug uuUUCCACAGCUUUCUUG ACUU  uc  agcu  gaauuuu aucucuc       aauug g
   |||||| |||||||||||||||||| ||||  ||  ||||  ||||||| |||||||       |||||  
   cgguau AAAGGGUGUCGAAAGAAC Ugaa  ag  ucga  uuuagag uagagag       uugau g
uaa      a                  C    --  uc    aa       -       uuuaauu     a 

Annotation confidence High

Genome context

Unknown

Mature nta-miR396b-5p

• Accession: MIMAT0024709
• Description: Nicotiana tabacum nta-miR396b-5p mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUU - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR396b-3p

• Accession: MIMAT0058105
• Description: Nicotiana tabacum nta-miR396b-3p mature miRNA
• Sequence: 111 - UCCAAGAAAGCUGUGGGAAA - 130
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28