Stem-loop nta-MIR396c

Accession

MI0021400

Description

Nicotiana tabacum nta-MIR396c precursor miRNA

Literature search

3 open access papers mention nta-MIR396c
(17 sentences)

Sequence

333946 reads, 24361.0 reads per million, 45 experiments

uaucaugcuuUUCCACAGCUUUCUUGAACUUcuuucccucugaauuuucaucucuagcaauugaguuauugauaugagauaagauuaagcucugaaaGUUCAAGAAAGCUGUGGGAAAacauggugaa
(((((((.(((((((((((((((((((((((...((...((.((((((.(((((...((((......))))....))))))))))).))....))))))))))))))))))))))))).)))))))..

Structure

--       c                       cuu  -ccu  g      c     -uag    ug 
  uaucaug uuUUCCACAGCUUUCUUGAACUU   uc    cu aauuuu aucuc    caau  a
  ||||||| |||||||||||||||||||||||   ||    || |||||| |||||    ||||   
  gugguac AAAGGGUGUCGAAAGAACUUGaa   ag    ga uuagaa uagag    guua  g
aa       a                       ---  ucuc  a      -     uaua    uu 

Annotation confidence High

Genome context

Unknown

Mature nta-miR396c-5p

• Accession: MIMAT0024710
• Description: Nicotiana tabacum nta-miR396c-5p mature miRNA
• Sequence: 11 - UUCCACAGCUUUCUUGAACUU - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR396c-3p

• Accession: MIMAT0058106
• Description: Nicotiana tabacum nta-miR396c-3p mature miRNA
• Sequence: 98 - GUUCAAGAAAGCUGUGGGAAA - 118
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28