Stem-loop nta-MIR398

Accession

MI0021402

Description

Nicotiana tabacum nta-MIR398 precursor miRNA

Literature search

9 open access papers mention nta-MIR398
(48 sentences)

Sequence

33274 reads, 3303.0 reads per million, 45 experiments

ugucaacaGGGGCAAUCUGAGAUCACAUGUugguacuuuucuuuuuucucuguaaaugacaagugugguuucaauaucucaauaUGUGUUCUCAGGUCGCCCCUGuagagcua
..((.((((((((.((((((((.(((((((((((((((.((.(((........))).)).))))).............)))))))))).)))))))).)))))))).))....

Structure

--ug  a        A        U          -------------     u  u   uuc 
    uc acaGGGGC AUCUGAGA CACAUGUugg             uacuu uc uuu   u
    || |||||||| |||||||| ||||||||||             ||||| || |||    
    ag uGUCCCCG UGGACUCU GUGUauaacu             gugaa ag aaa   c
aucg  a        C        U          cuauaacuuuggu     c  u   ugu 

Annotation confidence High

Genome context

Unknown

Mature nta-miR398-5p

• Accession: MIMAT0058108
• Description: Nicotiana tabacum nta-miR398-5p mature miRNA
• Sequence: 9 - GGGGCAAUCUGAGAUCACAUGU - 30
• Evidence: experimental ; unknown

Mature nta-miR398-3p

• Accession: MIMAT0024712
• Description: Nicotiana tabacum nta-miR398-3p mature miRNA
• Sequence: 85 - UGUGUUCUCAGGUCGCCCCUG - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28