Stem-loop nta-MIR399a

Accession

MI0021403

Description

Nicotiana tabacum nta-MIR399a precursor miRNA

Literature search

5 open access papers mention nta-MIR399a
(17 sentences)

Sequence

9440 reads, 724.0 reads per million, 29 experiments

aacagugguaGGGCUACUCUCUAUUGGCAUGccguuauauguauugugacucccucacauauaaauuucagcugacaCGCCAAAGGAGAGCUGCCCUGuuacugucuc
.(((((((((((((..((((((.(((((.(((.(((((.(((((.((((.....))))))))).))...))).).)).))))).))))))..)))))))))))))...

Structure

--a             UA      A     A  - c   ---  a     u    c 
   acagugguaGGGC  CUCUCU UUGGC UG c guu   au uguau guga u
   |||||||||||||  |||||| ||||| || | |||   || ||||| |||| c
   ugucauuGUCCCG  GAGAGG AACCG ac g cga   ua auaua cacu c
cuc             UC      A     C  a u   cuu  a     -    c 

Annotation confidence High

Genome context

Unknown

Mature nta-miR399a-5p

• Accession: MIMAT0058109
• Description: Nicotiana tabacum nta-miR399a-5p mature miRNA
• Sequence: 11 - GGGCUACUCUCUAUUGGCAUG - 31
• Evidence: experimental ; unknown

Mature nta-miR399a-3p

• Accession: MIMAT0024713
• Description: Nicotiana tabacum nta-miR399a-3p mature miRNA
• Sequence: 78 - CGCCAAAGGAGAGCUGCCCUG - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28