Stem-loop nta-MIR399b

Accession

MI0021404

Description

Nicotiana tabacum nta-MIR399b precursor miRNA

Literature search

5 open access papers mention nta-MIR399b
(13 sentences)

Sequence

9563 reads, 728.0 reads per million, 29 experiments

aacagugauaGGGCUACUCUCUAUUGGCAUGcaguuauauauguagugacuccacuucauaauauaauuuagcugacaCGCCAAAGGAGAGCUGCCCUGuuacugucuc
.(((((((((((((..((((((.(((((.((((((((((((((.((((....)))).))).))))).....)))).)).))))).))))))..)))))))))))))...

Structure

--a             UA      A     A  -    -----     -   u    a 
   acagugauaGGGC  CUCUCU UUGGC UG cagu     uauau aug agug c
   |||||||||||||  |||||| ||||| || ||||     ||||| ||| ||||  
   ugucauuGUCCCG  GAGAGG AACCG ac gucg     auaua uac ucac u
cuc             UC      A     C  a    auuua     a   u    c 

Annotation confidence High

Genome context

Unknown

Mature nta-miR399b-5p

• Accession: MIMAT0058110
• Description: Nicotiana tabacum nta-miR399b-5p mature miRNA
• Sequence: 11 - GGGCUACUCUCUAUUGGCAUG - 31
• Evidence: experimental ; unknown

Mature nta-miR399b-3p

• Accession: MIMAT0024714
• Description: Nicotiana tabacum nta-miR399b-3p mature miRNA
• Sequence: 79 - CGCCAAAGGAGAGCUGCCCUG - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28