Stem-loop nta-MIR399d

Accession

MI0021406

Description

Nicotiana tabacum nta-MIR399d precursor miRNA

Literature search

5 open access papers mention nta-MIR399d
(13 sentences)

Sequence

9266 reads, 747.0 reads per million, 28 experiments

aauagugguaGGGCUACUCUCUAUUGGCAUGcacuuaauuauguauagugauuccacuuaaucaucacauauauacuucaguugacaCGCCAAAGGAGAGCUGCCCUGuuacuaucuc
.(((((((((((((..((((((.(((((.((((((.((.(((((((.(((((...........)))))))))))).)).)).)).)).))))).))))))..)))))))))))))...

Structure

--a             UA      A     A  -  -  u  u       a     ucca 
   auagugguaGGGC  CUCUCU UUGGC UG ca cu aa uauguau gugau    c
   |||||||||||||  |||||| ||||| || || || || ||||||| |||||    u
   uaucauuGUCCCG  GAGAGG AACCG ac gu ga uu auauaua cacua    u
cuc             UC      A     C  a  u  c  c       -     cuaa 

Annotation confidence High

Genome context

Unknown

Mature nta-miR399d-5p

• Accession: MIMAT0058112
• Description: Nicotiana tabacum nta-miR399d-5p mature miRNA
• Sequence: 11 - GGGCUACUCUCUAUUGGCAUG - 31
• Evidence: experimental ; unknown

Mature nta-miR399d-3p

• Accession: MIMAT0024716
• Description: Nicotiana tabacum nta-miR399d-3p mature miRNA
• Sequence: 88 - CGCCAAAGGAGAGCUGCCCUG - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28