Stem-loop nta-MIR399e

Accession

MI0021407

Description

Nicotiana tabacum nta-MIR399e precursor miRNA

Literature search

5 open access papers mention nta-MIR399e
(13 sentences)

Sequence

9529 reads, 750.0 reads per million, 28 experiments

aauagugguaGGGCUACUCUCUAUUGGCAUGcaguuauuuauguagagugacuccacuucauaaccuauauauuucagcugacaCGCCAAAGGAGAGCUGCCCUGuuacugucuc
.(((((((((((((..((((((.(((((.((((((((..(((((((((((....)))).......)))))))..).))))).)).))))).))))))..)))))))))))))...

Structure

--a             UA      A     A  -     - uu       -------    a 
   auagugguaGGGC  CUCUCU UUGGC UG caguu a  uauguag       agug c
   |||||||||||||  |||||| ||||| || ||||| |  |||||||       ||||  
   ugucauuGUCCCG  GAGAGG AACCG ac gucga u  auauauc       ucac u
cuc             UC      A     C  a     c uu       caauacu    c 

Annotation confidence High

Genome context

Unknown

Mature nta-miR399e-5p

• Accession: MIMAT0058113
• Description: Nicotiana tabacum nta-miR399e-5p mature miRNA
• Sequence: 11 - GGGCUACUCUCUAUUGGCAUG - 31
• Evidence: experimental ; unknown

Mature nta-miR399e-3p

• Accession: MIMAT0024717
• Description: Nicotiana tabacum nta-miR399e-3p mature miRNA
• Sequence: 85 - CGCCAAAGGAGAGCUGCCCUG - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28