Stem-loop nta-MIR399f

Accession

MI0021408

Description

Nicotiana tabacum nta-MIR399f precursor miRNA

Literature search

5 open access papers mention nta-MIR399f
(13 sentences)

Sequence

9534 reads, 705.0 reads per million, 30 experiments

aauagugguaGGGCUACUCUCUAUUGGCAUGcaguuaauuauguauacugacucuuaaucaucgcacauauauauuucagcugacaCGCCAAAGGAGAGCUGCCCUGuuacugucuc
.(((((((((((((..((((((.(((((.(((((((((.(((((((..(((..........)))...))))))).)).))))).)).))))).))))))..)))))))))))))...

Structure

--a             UA      A     A  -     -  u       -ac   cucu 
   auagugguaGGGC  CUCUCU UUGGC UG caguu aa uauguau   uga    u
   |||||||||||||  |||||| ||||| || ||||| || |||||||   |||     
   ugucauuGUCCCG  GAGAGG AACCG ac gucga uu auauaua   gcu    a
cuc             UC      A     C  a     c  u       cac   acua 

Annotation confidence High

Genome context

Unknown

Mature nta-miR399f-5p

• Accession: MIMAT0058114
• Description: Nicotiana tabacum nta-miR399f-5p mature miRNA
• Sequence: 11 - GGGCUACUCUCUAUUGGCAUG - 31
• Evidence: experimental ; unknown

Mature nta-miR399f-3p

• Accession: MIMAT0024718
• Description: Nicotiana tabacum nta-miR399f-3p mature miRNA
• Sequence: 87 - CGCCAAAGGAGAGCUGCCCUG - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28