Stem-loop nta-MIR399g

Accession

MI0021409

Description

Nicotiana tabacum nta-MIR399g precursor miRNA

Literature search

5 open access papers mention nta-MIR399g
(13 sentences)

Sequence

9558 reads, 733.0 reads per million, 29 experiments

aauagugauaGGGCUACUCUCUAUUGGCAUGcaguuaauuauauguauuucagcugacaCGCCAAAGGAGAGCUGCCCUGuuacugucuc
.(((((((((((((..((((((.(((((.(((((((...............))))).)).))))).))))))..)))))))))))))...

Structure

--a             UA      A     A  -     aauuau 
   auagugauaGGGC  CUCUCU UUGGC UG caguu      a
   |||||||||||||  |||||| ||||| || |||||      u
   ugucauuGUCCCG  GAGAGG AACCG ac gucga      g
cuc             UC      A     C  a     cuuuau 

Annotation confidence High

Genome context

Unknown

Mature nta-miR399g-5p

• Accession: MIMAT0058115
• Description: Nicotiana tabacum nta-miR399g-5p mature miRNA
• Sequence: 11 - GGGCUACUCUCUAUUGGCAUG - 31
• Evidence: experimental ; unknown

Mature nta-miR399g-3p

• Accession: MIMAT0024719
• Description: Nicotiana tabacum nta-miR399g-3p mature miRNA
• Sequence: 60 - CGCCAAAGGAGAGCUGCCCUG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28