Stem-loop nta-MIR408

Accession

MI0021410

Description

Nicotiana tabacum nta-MIR408 precursor miRNA

Literature search

7 open access papers mention nta-MIR408
(229 sentences)

Sequence

90128 reads, 9975.0 reads per million, 46 experiments

gagaggauagACAGGGACGAGGUAGAGCAUGagaugugcaauuuuugcuugcccauucuaUGCACUGCCUCUUCCCUGGCUcuccucccuc
..(((((.((.((((((.(((((((.(((((.((((.((((.......)))).)))).))))).))))))).)))))).)).)))))....

Structure

--ga     u  A      C       A     a    u    uu 
    gagga ag CAGGGA GAGGUAG GCAUG gaug gcaa  u
    ||||| || |||||| ||||||| ||||| |||| ||||  u
    cuccu UC GUCCCU CUCCGUC CGUau uuac cguu  u
cucc     c  G      U       A     c    c    cg 

Annotation confidence High

Genome context

Unknown

Mature nta-miR408-5p

• Accession: MIMAT0058116
• Description: Nicotiana tabacum nta-miR408-5p mature miRNA
• Sequence: 11 - ACAGGGACGAGGUAGAGCAUG - 31
• Evidence: experimental ; unknown

Mature nta-miR408-3p

• Accession: MIMAT0024720
• Description: Nicotiana tabacum nta-miR408-3p mature miRNA
• Sequence: 61 - UGCACUGCCUCUUCCCUGGCU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28