Stem-loop nta-MIR477a

Accession

MI0021411

Description

Nicotiana tabacum nta-MIR477a precursor miRNA

Literature search

1 open access papers mention nta-MIR477a
(2 sentences)

Sequence

3313 reads, 302.0 reads per million, 27 experiments

gucuuuguucACUCUCCCUCAAGGGCUUCUGgcuuaaaaugccuuacucuuugguuuguguuagugccAGAGGUCUUUCGAGUGAGAGUGGauaaauucug
...(((((((((((((.((((((((((((((((((((...(((.........))).....)))).))))))))))))).))).))))))))))))).....

Structure

--guc             C   -             -    --aau   uua 
     uuuguucACUCUC CUC AAGGGCUUCUGgc uuaa     gcc   c
     ||||||||||||| ||| ||||||||||||| ||||     |||   u
     aaauaGGUGAGAG GAG UUUCUGGAGAccg gauu     ugg   c
gucuu             U   C             u    guguu   uuu 

Annotation confidence Medium

Genome context

Unknown

Mature nta-miR477a-5p

• Accession: MIMAT0024721
• Description: Nicotiana tabacum nta-miR477a-5p mature miRNA
• Sequence: 11 - ACUCUCCCUCAAGGGCUUCUG - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR477a-3p

• Accession: MIMAT0058117
• Description: Nicotiana tabacum nta-miR477a-3p mature miRNA
• Sequence: 69 - AGAGGUCUUUCGAGUGAGAGUGG - 91
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28