Stem-loop nta-MIR477b

Accession

MI0021412

Description

Nicotiana tabacum nta-MIR477b precursor miRNA

Literature search

2 open access papers mention nta-MIR477b
(5 sentences)

Sequence

701 reads, 193.0 reads per million, 27 experiments

cacugcuuguugUCUCUCCCUCAAGGGCUUCUCuucugcuuguucauaagauuuauaagcuuuuaauuaagaugcuaaacuuaaagcauacugggaauaggAGCUCUUGCAGGUUGAGACAACaagaaaugcc
.....(((((((((((..((((((((((((((.((((((((((...........)))))).........(((((((........))))).)).)))).))))))))))).)))..))))))))))).......

Structure

--cacug           UC   -           C    gcuuguucauaagauuuauaagcuuuuaauua  -     aaa 
       cuuguugUCUC  CCU CAAGGGCUUCU uucu                                ag augcu   c
       |||||||||||  ||| ||||||||||| ||||                                || |||||    
       gaaCAACAGAG  GGA GUUCUCGAgga aagg                                uc uacga   u
ccguaaa           UU   C           u    -------------------------------g  a     aau 

Annotation confidence High

Genome context

Unknown

Mature nta-miR477b-5p

• Accession: MIMAT0024722
• Description: Nicotiana tabacum nta-miR477b-5p mature miRNA
• Sequence: 13 - UCUCUCCCUCAAGGGCUUCUC - 33
• Evidence: experimental ; Illumina [1]

Mature nta-miR477b-3p

• Accession: MIMAT0058118
• Description: Nicotiana tabacum nta-miR477b-3p mature miRNA
• Sequence: 102 - AGCUCUUGCAGGUUGAGACAAC - 123
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28