Stem-loop nta-MIR479a

Accession

MI0021413

Description

Nicotiana tabacum nta-MIR479a precursor miRNA

Literature search

1 open access papers mention nta-MIR479a
(3 sentences)

Sequence

19863 reads, 834.0 reads per million, 35 experiments

ucagacauggCGUGAUAUUGGUUUGGCUCAUCacuuucuguugaauucaugagacagucuagagaugaUGAGCCGGACCAAUAUCACUCUuguaugcuu
.((.(((.((.(((((((((((((((((((((((((((((((..........)))))...)))).)))))))))))))))))))))))).))).))...

Structure

--u  g   u  C                      -    ---     gaau 
   ca aca gg GUGAUAUUGGUUUGGCUCAUCa cuuu   cuguu    u
   || ||| || |||||||||||||||||||||| ||||   |||||     
   gu ugu CU CACUAUAACCAGGCCGAGUagu gaga   gacag    c
uuc  a   U  -                      a    ucu     agua 

Annotation confidence High

Genome context

Unknown

Mature nta-miR479a-5p

• Accession: MIMAT0024723
• Description: Nicotiana tabacum nta-miR479a-5p mature miRNA
• Sequence: 11 - CGUGAUAUUGGUUUGGCUCAUC - 32
• Evidence: experimental ; Illumina [1]

Mature nta-miR479a-3p

• Accession: MIMAT0058119
• Description: Nicotiana tabacum nta-miR479a-3p mature miRNA
• Sequence: 69 - UGAGCCGGACCAAUAUCACUCU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28