Stem-loop nta-MIR479b

Accession

MI0021414

Description

Nicotiana tabacum nta-MIR479b precursor miRNA

Literature search

1 open access papers mention nta-MIR479b
(3 sentences)

Sequence

9096 reads, 439.0 reads per million, 35 experiments

ucagacauggCGUGAUAUUUGUUUGGCUCAUCacuuucuguugaauucaugagacaguccagagaugaUGAGCCGAACCAAUAUCACUCUuguaugcuu
.((.(((.((.((((((((.((((((((((((((((((((((..........)))))...)))).))))))))))))).)))))))))).))).))...

Structure

--u  g   u  C        U             -    ---     gaau 
   ca aca gg GUGAUAUU GUUUGGCUCAUCa cuuu   cuguu    u
   || ||| || |||||||| ||||||||||||| ||||   |||||     
   gu ugu CU CACUAUAA CAAGCCGAGUagu gaga   gacag    c
uuc  a   U  -        C             a    ccu     agua 

Annotation confidence High

Genome context

Unknown

Mature nta-miR479b-5p

• Accession: MIMAT0024724
• Description: Nicotiana tabacum nta-miR479b-5p mature miRNA
• Sequence: 11 - CGUGAUAUUUGUUUGGCUCAUC - 32
• Evidence: experimental ; Illumina [1]

Mature nta-miR479b-3p

• Accession: MIMAT0058120
• Description: Nicotiana tabacum nta-miR479b-3p mature miRNA
• Sequence: 69 - UGAGCCGAACCAAUAUCACUCU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28