Stem-loop nta-MIR827

Accession

MI0021415

Description

Nicotiana tabacum nta-MIR827 precursor miRNA

Literature search

1 open access papers mention nta-MIR827
(1 sentences)

Sequence

31927 reads, 10946.0 reads per million, 33 experiments

uaugaauuugUUUGUUGAUGGUCAUCUAUUCaucauucugcauaguuuuugcacccauuauccuauggUUAGAUGAACAUCAACAAACAucuucaucac
.(((((..((((((((((((.(((((((..........((((.......)))).((((......)))).))))))).))))))))))))..)))))...

Structure

--u     uu            G       ------UUCaucauuc    ua 
   augaa  ugUUUGUUGAUG UCAUCUA                ugca  g
   |||||  |||||||||||| |||||||                ||||  u
   uacuu  ACAAACAACUAC AGUAGAU                acgu  u
cac     cu            A       Ugguauccuauuaccc    uu 

Annotation confidence High

Genome context

Unknown

Mature nta-miR827-5p

• Accession: MIMAT0058121
• Description: Nicotiana tabacum nta-miR827-5p mature miRNA
• Sequence: 11 - UUUGUUGAUGGUCAUCUAUUC - 31
• Evidence: experimental ; unknown

Mature nta-miR827-3p

• Accession: MIMAT0024725
• Description: Nicotiana tabacum nta-miR827-3p mature miRNA
• Sequence: 69 - UUAGAUGAACAUCAACAAACA - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28