Stem-loop nta-MIR1919

Accession

MI0021416

Description

Nicotiana tabacum nta-MIR1919 precursor miRNA

Literature search

1 open access papers mention nta-MIR1919
(2 sentences)

Sequence

153208 reads, 13011.0 reads per million, 43 experiments

ccggugcuccUGUCGCAGAUGACUUUCGCCCUUcucuacaacgacccuucaucaauuuacaaugaagaaaucaaauaauucaguguuuuucuacuuggaggguuuuuagugugacaaGAGCGAGUCAUCUGUGACAGGauaauggaag
(((....((((((((((((((((..((((.(((.(((((((.(((((((((.......(((.((((............)))).))).........))))))))).)).))).)).))).))))))))))))))))))))...)))...

Structure

---   gugc                UU    C   c  -   -  c         --ucaauuu   a    gaaau 
   ccg    uccUGUCGCAGAUGAC  UCGC CUU uc uac aa gacccuuca         aca ugaa     c
   |||    ||||||||||||||||  |||| ||| || ||| || |||||||||         ||| ||||      
   ggu    aGGACAGUGUCUACUG  AGCG Gaa ag gug uu uugggaggu         ugu acuu     a
gaa   -aau                --    A   c  u   a  u         ucaucuuuu   g    aauaa 

Annotation confidence High

Genome context

Unknown

Mature nta-miR1919-5p

• Accession: MIMAT0058122
• Description: Nicotiana tabacum nta-miR1919-5p mature miRNA
• Sequence: 11 - UGUCGCAGAUGACUUUCGCCCUU - 33
• Evidence: experimental ; unknown

Mature nta-miR1919-3p

• Accession: MIMAT0024726
• Description: Nicotiana tabacum nta-miR1919-3p mature miRNA
• Sequence: 118 - GAGCGAGUCAUCUGUGACAGG - 138
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28