miRBase entry: nta-MIR6144

Stem-loop nta-MIR6144


Accession
MI0021419
Description
Nicotiana tabacum nta-MIR6144 precursor miRNA


Sequence

42928 reads, 2174.0 reads per million, 42 experiments
gaguaaacuaUGGCAACUUCUUCAUCAUGCCaacugccuucuacucaccacuuguuugagauaucggaguuugaacaaaaagagagagucuuuuggcaguuauggCUUGUUGAAGAAGUUUCCAUCauuuacuagc
.((((((..((((.((((((((((.((.((((((((((((((.(((.....((((((.((((......))))))))))...)))))))......))))))..)))).)).)))))))))).))))..))))))...

Structure
--g      cu    C          U  U    --      ------    a   accac      g    au 
   aguaaa  aUGG AACUUCUUCA CA GCCa  acugcc      uucu cuc     uuguuu agau  c
   ||||||  |||| |||||||||| || ||||  ||||||      |||| |||     |||||| ||||   
   ucauuu  UACC UUGAAGAAGU GU Cggu  ugacgg      gaga gag     aacaag uuug  g
cga      aC    U          U  U    au      uuuucu    -   --aaa      -    ag 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6144-5p

Accession MIMAT0024729
Description Nicotiana tabacum nta-miR6144-5p mature miRNA
Sequence 11 - UGGCAACUUCUUCAUCAUGCC - 31
Evidence experimental
Illumina [1]

Mature nta-miR6144-3p

Accession MIMAT0058124
Description Nicotiana tabacum nta-miR6144-3p mature miRNA
Sequence 106 - CUUGUUGAAGAAGUUUCCAUC - 126
Evidence experimental
unknown

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28