miRBase entry: nta-MIR6025c

Stem-loop nta-MIR6025c


Accession
MI0021420
Description
Nicotiana tabacum nta-MIR6025c precursor miRNA


Sequence

27833 reads, 2912.0 reads per million, 42 experiments
gucaaaccUGGAUGUAAUCUCAAUUGUUagcaugccuaaauugggcaaaacaucuccgcccagaaaauauauucugauaugagauucagaauauauuuguuggguguuuugccuaguccggcauaccaUCAAUUGAGAUGACAUCUAGUuuugacgauc
((((((.((((((((.((((((((((...(.(((((...((((((((((((......((((((.(((((((((((((........))))))))))))).))))))))))))))))))..))))).)...)))))))))).)))))))).))))))....

Structure
----      c        A          UUa c     uaa            aucucc      a             uau 
    gucaaa cUGGAUGU AUCUCAAUUG   g augcc   auugggcaaaac      gcccag aaauauauucuga   g
    |||||| |||||||| ||||||||||   | |||||   ||||||||||||      |||||| |||||||||||||    
    caguuu GAUCUACA UAGAGUUAAC   c uacgg   ugauccguuuug      uggguu uuuauauaagacu   a
cuag      U        G          Uac a     -cc            ------      g             uag 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6025c-5p

Accession MIMAT0058125
Description Nicotiana tabacum nta-miR6025c-5p mature miRNA
Sequence 9 - UGGAUGUAAUCUCAAUUGUU - 28
Evidence experimental
unknown

Mature nta-miR6025c-3p

Accession MIMAT0024730
Description Nicotiana tabacum nta-miR6025c-3p mature miRNA
Sequence 129 - UCAAUUGAGAUGACAUCUAGU - 149
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28