miRBase entry: nta-MIR6145a

Stem-loop nta-MIR6145a


Accession
MI0021421
Description
Nicotiana tabacum nta-MIR6145a precursor miRNA


Sequence

11558 reads, 985.0 reads per million, 44 experiments
uuucaguggcCAUUUUCACAUGUAGCACUGACuggauugcaaaauccaauuCGGUGCUCAUGUGAAGGUGACUucugcuugc
...(((.((.((((((((((((.((((((((.((((((....))))))..)))))))))))))))))))).)).))).....

Structure
--uuu   u  c            U        -C      g 
     cag gg CAUUUUCACAUG AGCACUGA  uggauu c
     ||| || |||||||||||| ||||||||  ||||||  
     guc UC GUGGAAGUGUAC UCGUGGCu  accuaa a
cguuc   u  A            -        ua      a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6145a-5p

Accession MIMAT0024731
Description Nicotiana tabacum nta-miR6145a-5p mature miRNA
Sequence 11 - CAUUUUCACAUGUAGCACUGAC - 32
Evidence experimental
Illumina [1]

Mature nta-miR6145a-3p

Accession MIMAT0058126
Description Nicotiana tabacum nta-miR6145a-3p mature miRNA
Sequence 52 - CGGUGCUCAUGUGAAGGUGACU - 73
Evidence experimental
unknown

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28