Stem-loop nta-MIR6025e

Accession

MI0021423

Description

Nicotiana tabacum nta-MIR6025e precursor miRNA

Literature search

1 open access papers mention nta-MIR6025e
(1 sentences)

Sequence

19112 reads, 1055.0 reads per million, 45 experiments

cguaccuggaUGUUAUCUCAGUGUUGGCAUGcauaaguuggguaagacauaucugaucaaaaauauuuuuugagaugagauggaauauauauauauauauauauauauauauauauauauauauauugguguuuuaccugguccaggcaUGCCAAUUAUAGAGAUGACAUCuagguugggg
(..((((((((((((((((...((((((((((.....(((((((((((((((((.(((.((((....))))..))).))))..((((((((((((((((((((....)))))))))))))))))))).))))))))))))).....))))))))))....))))))))))))))))..)..

Structure

-- gu                -AGU          auaag             aucugaucaaaaauauuuuuugagaugagaugg                    u 
  c  accuggaUGUUAUCUC    GUUGGCAUGc     uuggguaagacau                                 aauauauauauauauauaua a
  |  ||||||||||||||||    ||||||||||     |||||||||||||                                 ||||||||||||||||||||  
  g  uggauCUACAGUAGAG    UAACCGUacg     gguccauuuugug                                 uuauauauauauauauauau u
gg gu                AUAU          gaccu             --------------------------------g                    a 

Annotation confidence High

Genome context

Unknown

Mature nta-miR6025e-5p

• Accession: MIMAT0058128
• Description: Nicotiana tabacum nta-miR6025e-5p mature miRNA
• Sequence: 11 - UGUUAUCUCAGUGUUGGCAUG - 31
• Evidence: experimental ; unknown

Mature nta-miR6025e-3p

• Accession: MIMAT0024733
• Description: Nicotiana tabacum nta-miR6025e-3p mature miRNA
• Sequence: 150 - UGCCAAUUAUAGAGAUGACAUC - 171
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28