miRBase entry: nta-MIR6146a

Stem-loop nta-MIR6146a


Accession
MI0021424
Description
Nicotiana tabacum nta-MIR6146a precursor miRNA


Sequence

35114 reads, 3410.0 reads per million, 43 experiments
cucaacgggcUUUGUCCAAUGAAACACUUAUCggacaucaaggguucagaUCAGUGUUCACUGGACAAAGAUcguuaccgu
...((((..(((((((((.((((.((((.(((((((.......)))).))).)))))))).)))))))))..)))).....

Structure
--cuc    gg         A    A    U   -    au 
     aacg  cUUUGUCCA UGAA CACU AUC ggac  c
     ||||  ||||||||| |||| |||| ||| ||||  a
     uugc  GAAACAGGU ACUU GUGA Uag cuug  a
ugcca    UA         C    -    C   a    gg 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6146a-5p

Accession MIMAT0024734
Description Nicotiana tabacum nta-miR6146a-5p mature miRNA
Sequence 11 - UUUGUCCAAUGAAACACUUAUC - 32
Evidence experimental
Illumina [1]

Mature nta-miR6146a-3p

Accession MIMAT0058129
Description Nicotiana tabacum nta-miR6146a-3p mature miRNA
Sequence 51 - UCAGUGUUCACUGGACAAAGAU - 72
Evidence experimental
unknown

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28