Stem-loop nta-MIR6149a

Accession

MI0021429

Description

Nicotiana tabacum nta-MIR6149a precursor miRNA

Literature search

1 open access papers mention nta-MIR6149a
(3 sentences)

Sequence

1543536 reads, 66471.0 reads per million, 46 experiments

augucaaagcUUGAUACGCACCUGAAUCGGCaguuacauacagaccaauaguauauuaguacauaugcCGGUUUGGGUUCGUAUCAAACUaugauauac
((((((.((.((((((((.(((((((((((((..(((((((.........))))....)))....))))))))))))).)))))))).)).))))))..

Structure

--      a  c        C             --gu   ----    aga 
  auguca ag UUGAUACG ACCUGAAUCGGCa    uac    auac   c
  |||||| || |||||||| |||||||||||||    |||    ||||   c
  uauagu UC AACUAUGC UGGGUUUGGCcgu    aug    uaug   a
ca      a  A        U             auac   auua    aua 

Annotation confidence High

Genome context

Unknown

Mature nta-miR6149a-5p

• Accession: MIMAT0024739
• Description: Nicotiana tabacum nta-miR6149a-5p mature miRNA
• Sequence: 11 - UUGAUACGCACCUGAAUCGGC - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR6149a-3p

• Accession: MIMAT0058134
• Description: Nicotiana tabacum nta-miR6149a-3p mature miRNA
• Sequence: 69 - CGGUUUGGGUUCGUAUCAAACU - 90
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28