miRBase entry: nta-MIR6145b

Stem-loop nta-MIR6145b


Accession
MI0021443
Description
Nicotiana tabacum nta-MIR6145b precursor miRNA


Sequence

13631 reads, 891.0 reads per million, 40 experiments
gcaagaguuaUUAUCAUACGUAGCACUAGCCaaauggagaaauaucgguCAGUGCUCGUGUAAUAAUAACUuuuguucgu
((((((((((((((.(((((.((((((.(((..(((......))).))).))))))))))).))))))))))))))....

Structure
----              C     U      A   aa   ga 
    gcaagaguuaUUAU AUACG AGCACU GCC  aug  g
    |||||||||||||| ||||| |||||| |||  |||   
    uguuuUCAAUAAUA UGUGC UCGUGA ugg  uau  a
ugcu              A     -      C   -c   aa 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6145b-5p

Accession MIMAT0024753
Description Nicotiana tabacum nta-miR6145b-5p mature miRNA
Sequence 11 - UUAUCAUACGUAGCACUAGCC - 31
Evidence experimental
Illumina [1]

Mature nta-miR6145b-3p

Accession MIMAT0058148
Description Nicotiana tabacum nta-miR6145b-3p mature miRNA
Sequence 50 - CAGUGCUCGUGUAAUAAUAACU - 71
Evidence experimental
unknown

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28