miRBase entry: nta-MIR6153

Stem-loop nta-MIR6153


Accession
MI0021444
Description
Nicotiana tabacum nta-MIR6153 precursor miRNA


Sequence

30561 reads, 1374.0 reads per million, 44 experiments
ugauacaguuUAGGACCAUAUUCACUAUUUGaugauuaacaaaauaugaucaucaccuuuuacucuuugagcaaGUAGUGAAAAUGGUUCUAAAUUGuuuugga
.((.(((((((((((((((.((((((((((((((((((........))))))))........(((...))).)))))))))).))))))))))))))).))...

Structure
--u  u               A          ------------------        aca 
   ga acaguuUAGGACCAU UUCACUAUUU                  Gaugauua   a
   || ||||||||||||||| ||||||||||                  ||||||||    
   uu uGUUAAAUCUUGGUA AAGUGAUGaa                  cuacuagu   a
agg  u               A          cgaguuucucauuuucca        aua 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6153-5p

Accession MIMAT0024754
Description Nicotiana tabacum nta-miR6153-5p mature miRNA
Sequence 11 - UAGGACCAUAUUCACUAUUUG - 31
Evidence experimental
Illumina [1]

Mature nta-miR6153-3p

Accession MIMAT0058149
Description Nicotiana tabacum nta-miR6153-3p mature miRNA
Sequence 75 - GUAGUGAAAAUGGUUCUAAAUUG - 97
Evidence experimental
unknown

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28