miRBase entry: nta-MIR6154b

Stem-loop nta-MIR6154b


Accession
MI0021446
Description
Nicotiana tabacum nta-MIR6154b precursor miRNA


Sequence

2757 reads, 174.0 reads per million, 33 experiments
aacuccauagCCUUACUCCAGGUAGAUCCACCagaacaugaaguucaaggUGGGUCUCCUGGAGAAAGGUCcuuuggugg
..(.(((..(((((.(((((((.(((((((((.((((.....))))..)))))))))))))))).)))))....))).).

Structure
aa u   --ua     A       U         -a    a 
  c cca    gCCUU CUCCAGG AGAUCCACC  gaac u
  | |||    ||||| ||||||| |||||||||  |||| g
  g ggu    UGGAA GAGGUCC UCUGGGUgg  cuug a
-g u   uucC     A       -         aa    a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6154b-5p

Accession MIMAT0058151
Description Nicotiana tabacum nta-miR6154b-5p mature miRNA
Sequence 11 - CCUUACUCCAGGUAGAUCCACC - 32
Evidence experimental
unknown

Mature nta-miR6154b-3p

Accession MIMAT0024756
Description Nicotiana tabacum nta-miR6154b-3p mature miRNA
Sequence 51 - UGGGUCUCCUGGAGAAAGGUC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28