Stem-loop nta-MIR5303b

Accession

MI0021452

Description

Nicotiana tabacum nta-MIR5303b precursor miRNA

Literature search

1 open access papers mention nta-MIR5303b
(1 sentences)

Sequence

5738 reads, 572.0 reads per million, 43 experiments

ggugucuccgAAAAUGUGGCCGGAUACGUGUcggauuguccaaaaauagugcauuuuugaaugauccgacACGGGUGCGGCUACAUUUUGGagaguucgcgcaa
.((((((((.((((((((((((.((.(((((((((((((.(((((((.....))))))).))))))))))))).)).)))))))))))))))))...)))....

Structure

---g   ---     g            G  A             c       a 
    gug   ucucc AAAAUGUGGCCG AU CGUGUcggauugu caaaaau g
    |||   ||||| |||||||||||| || ||||||||||||| ||||||| u
    cgc   agaGG UUUUACAUCGGC UG GCAcagccuagua guuuuua g
aacg   uug     -            G  G             a       c 

Annotation confidence Medium

Genome context

Unknown

Mature nta-miR5303b-5p

• Accession: MIMAT0024762
• Description: Nicotiana tabacum nta-miR5303b-5p mature miRNA
• Sequence: 11 - AAAAUGUGGCCGGAUACGUGU - 31
• Evidence: experimental ; Illumina [1]

Mature nta-miR5303b-3p

• Accession: MIMAT0058157
• Description: Nicotiana tabacum nta-miR5303b-3p mature miRNA
• Sequence: 71 - ACGGGUGCGGCUACAUUUUGG - 91
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28