miRBase entry: nta-MIR1446

Stem-loop nta-MIR1446


Accession
MI0021453
Description
Nicotiana tabacum nta-MIR1446 precursor miRNA


Sequence

13058 reads, 763.0 reads per million, 34 experiments
cagcguuuucUGAACUCUCUCCCUCAAUGGCUgcucauauauauauagccaugcuucuuaauuaauuaaagaacagCCAUGAGAGAUUGAGUUCAGAaaacucuggc
(((.(((((((((((((..((.((((.((((((.((..................................)).)))))))))).))..))))))))))))).)))..

Structure
--   c             UC  C    A      c  auauauauauagccau 
  cag guuuucUGAACUC  UC CUCA UGGCUg uc                g
  ||| |||||||||||||  || |||| |||||| ||                 
  guc caaaAGACUUGAG  AG GAGU ACCgac ag                c
cg   u             UU  A    -      a  aaauuaauuaauucuu 


Annotation confidence Medium
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR1446-5p

Accession MIMAT0024763
Description Nicotiana tabacum nta-miR1446-5p mature miRNA
Sequence 11 - UGAACUCUCUCCCUCAAUGGCU - 32
Evidence experimental
Illumina [1]

Mature nta-miR1446-3p

Accession MIMAT0058158
Description Nicotiana tabacum nta-miR1446-3p mature miRNA
Sequence 77 - CCAUGAGAGAUUGAGUUCAGA - 97
Evidence experimental
unknown

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28