Stem-loop nta-MIR6145e

Accession

MI0021455

Description

Nicotiana tabacum nta-MIR6145e precursor miRNA

Literature search

1 open access papers mention nta-MIR6145e
(2 sentences)

Sequence

102480 reads, 4306.0 reads per million, 44 experiments

guaaugagcAUUGUUACAUGUAGCACUGGCucgcauaaauauuuaccagcCCGUGCUCAUGUGACAAUCCccuuugcucg
.....(((((((((((((((.(((((.((((.(.(........).).)))).))))))))))))))).......))))).

Structure

guaau     -------          U     U    c c uaa 
     gagcA       UUGUUACAUG AGCAC GGCu g a   a
     |||||       |||||||||| ||||| |||| | |    
     cucgu       AACAGUGUAC UCGUG Ccga c u   u
----g     uuccCCU          -     C    c a uua 

Annotation confidence Medium

Genome context

Unknown

Mature nta-miR6145e-5p

• Accession: MIMAT0024765
• Description: Nicotiana tabacum nta-miR6145e-5p mature miRNA
• Sequence: 10 - AUUGUUACAUGUAGCACUGGC - 30
• Evidence: experimental ; Illumina [1]

Mature nta-miR6145e-3p

• Accession: MIMAT0058160
• Description: Nicotiana tabacum nta-miR6145e-3p mature miRNA
• Sequence: 51 - CCGUGCUCAUGUGACAAUCC - 70
• Evidence: experimental ; unknown

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28