miRBase entry: nta-MIR6158a

Stem-loop nta-MIR6158a


Accession
MI0021456
Description
Nicotiana tabacum nta-MIR6158a precursor miRNA


Sequence

6217 reads, 510.0 reads per million, 40 experiments
caagaugcccAAGUUCGAUUUGUACGAAGGGCauggcgauccuauggcacaucuacggggcuuuuguagcaaaaugaggggagcagggggaaaugaugagcuacugauagcUUACUUUGGCCAGAGUUUGAGCgggucggcacuggagugguauacaa
....((((((.((((((((((((.((((.....((((.(((((...((...(((.((..(((.....)))....)))))...))...)))).....(((((((....)))))))...).))))...)))).))))))))).)))...).)))))....

Structure
caag     - --A   -         A    GGGCa    g uccuauggcacaucuacggggcuuuuguagcaaaaugaggggagcagggggaaauga       c 
    augcc c   AGU UCGAUUUGU CGAA     uggc a                                                         ugagcua u
    ||||| |   ||| ||||||||| ||||     |||| |                                                         |||||||  
    uaugg g   uca ggcugggCG GUUU     ACCG U                                                         AUUcgau g
aaca     u agg   c         A    --GAG    G ------------------------------------------------------UUC       a 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6158a-5p

Accession MIMAT0024766
Description Nicotiana tabacum nta-miR6158a-5p mature miRNA
Sequence 11 - AAGUUCGAUUUGUACGAAGGGC - 32
Evidence experimental
Illumina [1]

Mature nta-miR6158a-3p

Accession MIMAT0058161
Description Nicotiana tabacum nta-miR6158a-3p mature miRNA
Sequence 112 - UUACUUUGGCCAGAGUUUGAGC - 133
Evidence experimental
unknown

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28