miRBase entry: nta-MIR6158b

Stem-loop nta-MIR6158b


Accession
MI0021457
Description
Nicotiana tabacum nta-MIR6158b precursor miRNA


Sequence

4461 reads, 306.0 reads per million, 41 experiments
ucaaaaugcccAAGUUCGAUUUGUACGAAGGGCauggcaauccuauggcacaucuacggggcuuuuguagcaaaaugaggggagcagggagaaaagaugagcuacugauagcuuacuuuggccagaauuugagcggguCGGCACUGGAGUGGUAUACAA
.....((((((.((((((((((((.((((.....((((..((((...((...(((.((..(((.....)))....)))))...)).))))..((((.(((((((....))))))))))).))))...)))).))))))))).)))...).)))))....

Structure
ucaaa     - --A   -         A    GGGCa    ----------------------------aa    aug  aca   a  --gg   u 
     augcc c   AGU UCGAUUUGU CGAA     uggc                              uccu   gc   ucu cg    gcu u
     ||||| |   ||| ||||||||| ||||     ||||                              ||||   ||   ||| ||    ||| u
     UAUGG G   UCA GGCugggcg guuu     accg                              aggg   cg   gga gu    cga g
-AACA     U AGG   C         a    --aag    guuucauucgauagucaucgaguagaaaag    --a  agg   -  aaaa   u 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6158b-5p

Accession MIMAT0024767
Description Nicotiana tabacum nta-miR6158b-5p mature miRNA
Sequence 12 - AAGUUCGAUUUGUACGAAGGGC - 33
Evidence experimental
Illumina [1]

Mature nta-miR6158b-3p

Accession MIMAT0058162
Description Nicotiana tabacum nta-miR6158b-3p mature miRNA
Sequence 139 - CGGCACUGGAGUGGUAUACAA - 159
Evidence experimental
unknown

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28