Stem-loop nta-MIR5303c

Accession

MI0021460

Description

Nicotiana tabacum nta-MIR5303c precursor miRNA

Literature search

1 open access papers mention nta-MIR5303c
(1 sentences)

Sequence

6480 reads, 653.0 reads per million, 44 experiments

cggugucuccgAAAAUGUGGCCGGAUACGUGUcggauuguccaaaaauagugcauuuuugaaggauccgacACGGGUGCGGCUACAUUUUGGagaguucgcg
..((((((((.((((((((((((.((.(((((((((((.(.(((((((.....))))))).).))))))))))).)).)))))))))))))))))...))).

Structure

cg   ---     g            G  A           g c       a 
  gug   ucucc AAAAUGUGGCCG AU CGUGUcggauu u caaaaau g
  |||   ||||| |||||||||||| || ||||||||||| | ||||||| u
  cgc   agaGG UUUUACAUCGGC UG GCAcagccuag a guuuuua g
-g   uug     -            G  G           g a       c 

Annotation confidence Medium

Genome context

Unknown

Mature nta-miR5303c-5p

• Accession: MIMAT0058165
• Description: Nicotiana tabacum nta-miR5303c-5p mature miRNA
• Sequence: 12 - AAAAUGUGGCCGGAUACGUGU - 32
• Evidence: experimental ; unknown

Mature nta-miR5303c-3p

• Accession: MIMAT0024770
• Description: Nicotiana tabacum nta-miR5303c-3p mature miRNA
• Sequence: 72 - ACGGGUGCGGCUACAUUUUGG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22353177
   Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
   Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
   BMC Plant Biol (2012) 12:28