miRBase entry: nta-MIR6145f

Stem-loop nta-MIR6145f


Accession
MI0021461
Description
Nicotiana tabacum nta-MIR6145f precursor miRNA


Sequence

23094 reads, 2311.0 reads per million, 40 experiments
gguaauugauAUCGUAACAUAUAGCACUAGCuaugccuauaugugcgagcCAGUGCUCAUGCUACGAUAUCgauuaucauc
((((((((((((((((.(((..((((((.(((.((((.....).)))))).)))))).))).))))))))))))))))...

Structure
---                A   AU      A   a   - u 
   gguaauugauAUCGUA CAU  AGCACU GCu ugc c a
   |||||||||||||||| |||  |||||| ||| ||| | u
   cuauuagCUAUAGCAU GUA  UCGUGA cga gcg g a
cua                C   -C      C   -   u u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6145f-5p

Accession MIMAT0024771
Description Nicotiana tabacum nta-miR6145f-5p mature miRNA
Sequence 11 - AUCGUAACAUAUAGCACUAGC - 31
Evidence experimental
Illumina [1]

Mature nta-miR6145f-3p

Accession MIMAT0058166
Description Nicotiana tabacum nta-miR6145f-3p mature miRNA
Sequence 51 - CAGUGCUCAUGCUACGAUAUC - 71
Evidence experimental
unknown

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28