miRBase entry: nta-MIR6161a

Stem-loop nta-MIR6161a


Accession
MI0021464
Description
Nicotiana tabacum nta-MIR6161a precursor miRNA


Sequence

28120 reads, 3550.0 reads per million, 44 experiments
auuuugcugcaacagagacugguccagcauaauauauuggaguucgGUGCACCUGUGUAUGAACUCCAGCAuauuauGCUGGACCGGUAUACUUUGCUGACuccaguauaa
....(((((((.(((((((((((((((((((((((.((((((((((.((((....)))))))))))))).))))))))))))))))))...))))).))....)))))...

Structure
auuu     ----  a     ---                  a          G    C 
    ugcug    ca cagag   acugguccagcauaauau uuggaguucg UGCA C
    |||||    || |||||   |||||||||||||||||| |||||||||| ||||  
    augac    GU GUUUC   UGGCCAGGUCGuauuauA GACCUCAAGU AUGU U
-aau     cuCA  C     AUA                  C          -    G 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature nta-miR6161a-5p

Accession MIMAT0058169
Description Nicotiana tabacum nta-miR6161a-5p mature miRNA
Sequence 47 - GUGCACCUGUGUAUGAACUCCAGCA - 71
Evidence experimental
unknown

Mature nta-miR6161a-3p

Accession MIMAT0024774
Description Nicotiana tabacum nta-miR6161a-3p mature miRNA
Sequence 78 - GCUGGACCGGUAUACUUUGCUGAC - 101
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22353177
    Identification of wounding and topping responsive small RNAs in tobacco (Nicotiana tabacum)
    Tang S, Wang Y, Li Z, Gui Y, Xiao B, Xie J, Zhu QH, Fan L
    BMC Plant Biol (2012) 12:28